Taxa dominating the bacterial microbiota of the digestive tract
Taxa dominating the bacterial microbiota of the digestive tract
Taxa dominating the bacterial microbiota of the digestive tract
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Rothia
Phylum: Actinobacteria
Class: Actinobacteria
Order: Actinomycetales
Family: Micrococcaceae
Genus: Rothia
Gram: +
(typically found dominating in the upper GI tract)
Bifidobacterium
Phylum: Actinobacteria
Class: Actinobacteria
Order: Bifidobacteriales
Family: Bifidobacteriaceae
Genus: Bifidobacterium
Gram: +
Streptococcus
Phylum: Firmicutes
Class: Bacilli
Order: Lactobacillales
Family: Streptococcaceae
Genus: Streptococcus
Gram: +
Lactobacillus
Phylum: Firmicutes
Class: Bacilli
Order: Lactobacillales
Family: Lactobacillaceae
Genus: Lactobacillus
Gram: +
Enterococcus
Phylum: Firmicutes
Class: Bacilli
Order: Lactobacillales
Family: Enterococcaceae
Genus: Enterococcus
Gram: +
Veillonella
Phylum: Firmicutes
Class: Negativicutes
Order: Veillonellales
Family: Veillonellaceae
Genus: Veillonella
Gram: (-) reaction is negative or variable
Dialister
Phylum: Firmicutes
Class: Negativicutes
Order: Veillonellales
Family: Veillonellaceae
Genus: Dialister
Gram: (-) reaction is negative or variable
Mogibacterium
Phylum: Firmicutes
Class: Clostridia
Order: Clostridiales
Family: Eubacteriaceae
Genus: Mogibacterium
Gram: +
(typically found dominating in the upper GI tract)
Peptostreptococcus
Phylum: Firmicutes
Class: Clostridia
Order: Clostridiales
Family: Peptostreptococcaceae
Genus: Peptostreptococcus
Gram: +
(typically found dominating in the upper GI tract)
Coprococcus
Phylum: Firmicutes
Class: Clostridia
Order: Clostridiales
Family: Lachnospiraceae
Genus: Coprococcus
Gram: +
Dorea
Phylum: Firmicutes
Class: Clostridia
Order: Clostridiales
Family: Lachnospiraceae
Genus: Dorea
Gram: +
Roseburia
Phylum: Firmicutes
Class: Clostridia
Order: Clostridiales
Family: Lachnospiraceae
Genus: Roseburia
Gram: (-) reaction is negative or variable
Butyrivibrio
Phylum: Firmicutes
Class: Clostridia
Order: Clostridiales
Family: Lachnospiraceae
Genus: Butyrivibrio
Gram: (-) reaction is negative or variable; negative gram-reaction is due to a thin cell wall which has gram-positive characteristics
Ruminococcus
Phylum: Firmicutes
Class: Clostridia
Order: Clostridiales
Family: Ruminococcaceae
Genus: Ruminococcus
Gram: +
Faecalibacterium
Phylum: Firmicutes
Class: Clostridia
Order: Clostridiales
Family: Ruminococcaceae
Genus: Faecalibacterium
Gram: +
Anaerotruncus
Phylum: Firmicutes
Class: Clostridia
Order: Clostridiales
Family: Ruminococcaceae
Genus: Anaerotruncus
Gram: +
Subdoligranulum
Phylum: Firmicutes
Class: Clostridia
Order: Clostridiales
Family: Ruminococcaceae
Genus: Subdoligranulum
Gram: +
Clostridium
Phylum: Firmicutes
Class: Clostridia
Order: Clostridiales
Family: Clostridiaceae
Genus: Clostridium
Gram: +
Blautia
Phylum: Firmicutes
Class: Clostridia
Order: Clostridiales
Family: Clostridiaceae
Genus: Blautia
Gram: +
Eubacterium
Phylum: Firmicutes
Class: Clostridia
Order: Clostridiales
Family: Eubacteriaceae
Genus: Eubacterium
Gram: +
Collinsella
Phylum: Actinobacteria
Class: Actinobacteria
Order: Coriobacteriales
Family: Coriobacteriaceae
Genus: Collinsella
Gram: +
Holdemania
Phylum: Firmicutes
Class: Erysipelotrichia
Order: Erysipelotrichales
Family: Erysipelotrichaceae
Genus: Holdemania
Gram: +
Sutterella
Phylum: Proteobacteria
Class: Betaproteobacteria
Order: Burkholderiales
Family: Alcaligenaceae
Genus: Sutterella
Gram: -
Neisseria
Phylum: Proteobacteria
Class: Betaproteobacteria
Order: Neisseriales
Family: Neisseriaceae
Genus: Neisseria
Gram: -
Bilophila
Phylum: Proteobacteria
Class: Deltaproteobacteria
Order: Desulfovibrionales
Family: Desulfovibrionaceae
Genus: Bilophila
Gram: -
Haemophilus
Phylum: Proteobacteria
Class: Gammaproteobacteria
Order: Pasteurellales
Family: Pasteurellaceae
Genus: Haemophilus
Gram: -
(typically found dominating in the upper GI tract)
Enterobacter
Phylum: Proteobacteria
Class: Gammaproteobacteria
Family: Enterobacteriaceae
Genus: Enterobacter
Gram: -
(typically found dominating in the upper GI tract)
Serratia
Phylum: Proteobacteria
Class: Gammaproteobacteria
Family: Enterobacteriaceae
Genus: Serratia
Gram: -
(typically found dominating in the upper GI tract)
Escherichia
Phylum: Proteobacteria
Class: Gammaproteobacteria
Family: Enterobacteriaceae
Genus: Escherichia
Gram: -
Klebsiella
Phylum: Proteobacteria
Class: Gammaproteobacteria
Order: Enterobacteriales
Family: Enterobacteriaceae
Genus: Klebsiella
Gram: -
Acinetobacter
Phylum: Proteobacteria
Class: Gammaproteobacteria
Order: Pseudomonadales
Family: Moraxellaceae
Genus: Acinetobacter
Gram: -
Pseudomonas
Phylum: Proteobacteria
Class: Gammaproteobacteria
Order: Pseudomonadales
Family: Pseudomonadaceae
Genus: Preudomonas
Gram: -
(typically found dominating in the upper GI tract)
Cardiobacterium
Phylum: Proteobacteria
Class: Gammaproteobacteria
Order: Cardiobacteriales
Family: Cardiobacteriaceae
Genus: Cardiobacterium
Gram: -
Prevotella
Phylum: Bacteroidetes
Class: Bacteroidia
Order: Bacteroidales
Family: Prevotellaceae
Genus: Prevotella
Gram: -
(typically found dominating in the upper GI tract)
Porphyromonas
Phylum: Bacteroidetes
Class: Bacteroidia
Order: Bacteroidales
Family: Porphyromonadaceae
Genus: Porphyromonas
Gram: -
(typically found dominating in the upper GI tract)
Parabacteroides
Phylum: Bacteroidetes
Class: Bacteroidia
Order: Bacteroidales
Family: Porphyromonadaceae
Genus: Parabacteroides
Gram: -
Bacteroides
Phylum: Bacteroidetes
Class: Bacteroidia
Order: Bacteroidales
Family: Bacteroidaceae
Genus: Bacteroides
Gram: -
Alistipes
Phylum: Bacteroidetes
Class: Bacteroidia
Order: Bacteroidales
Family: Rikenellaceae
Genus: Alistipes
Gram: -
Fusobacterium
Phylum: Fusobacteria
Class: Fusobacteria
Order: Fusobacteriales
Family: Fusobacteriaceae
Genus: Fusobacterium
Gram: -
Brachyspira
Phylum: Spirochaetae
Class: Spirochaetes
Order: Spirochaetales
Family: Brachyspiraceae
Genus: Brachyspira
Gram: -
